CD-CTFM: A Lightweight CNN-Transformer Network for Remote Sensing Cloud Detection Fusing Multiscale Features

Clouds in remote sensing images inevitably affect information extraction, which hinder the following analysis of satellite images. Hence, cloud detection is a necessary preprocessing procedure. However, the existing methods have numerous calculations and parameters. In this letter, a lightweight CNN-Transformer network, CD-CTFM, is proposed to solve the problem. CD-CTFM is based on encoder-decoder architecture and incorporates the attention mechanism. In the decoder part, we utilize a lightweight network combing CNN and Transformer as backbone, which is conducive to extract local and global features simultaneously. Moreover, a lightweight feature pyramid module is designed to fuse multiscale features with contextual information. In the decoder part, we integrate a lightweight channel-spatial attention module into each skip connection between encoder and decoder, extracting low-level features while suppressing irrelevant information without introducing many parameters. Finally, the proposed model is evaluated on two cloud datasets, 38-Cloud and MODIS. The results demonstrate that CD-CTFM achieves comparable accuracy as the state-of-art methods. At the same time, CD-CTFM outperforms state-of-art methods in terms of efficiency.

Heterogeneous graphs model spatial relationships between biological entities for breast cancer diagnosis

The heterogeneity of breast cancer presents considerable challenges for its early detection, prognosis, and treatment selection. Convolutional neural networks often neglect the spatial relationships within histopathological images, which can limit their accuracy. Graph neural networks (GNNs) offer a promising solution by coding the spatial relationships within images. Prior studies have investigated the modeling of histopathological images as cell and tissue graphs, but they have not fully tapped into the potential of extracting interrelationships between these biological entities. In this paper, we present a novel approach using a heterogeneous GNN that captures the spatial and hierarchical relations between cell and tissue graphs to enhance the extraction of useful information from histopathological images. We also compare the performance of a cross-attention-based network and a transformer architecture for modeling the intricate relationships within tissue and cell graphs. Our model demonstrates superior efficiency in terms of parameter count and achieves higher accuracy compared to the transformer-based state-of-the-art approach on three publicly available breast cancer datasets -- BRIGHT, BreakHis, and BACH.

Large Scale Genealogical Information Extraction From Handwritten Quebec Parish Records

This paper presents a complete workflow designed for extracting information from Quebec handwritten parish registers. The acts in these documents contain individual and family information highly valuable for genetic, demographic and social studies of the Quebec population. From an image of parish records, our workflow is able to identify the acts and extract personal information. The workflow is divided into successive steps: page classification, text line detection, handwritten text recognition, named entity recognition and act detection and classification. For all these steps, different machine learning models are compared. Once the information is extracted, validation rules designed by experts are then applied to standardize the extracted information and ensure its consistency with the type of act (birth, marriage, and death). This validation step is able to reject records that are considered invalid or merged. The full workflow has been used to process over two million pages of Quebec parish registers from the 19-20th centuries. On a sample comprising 65% of registers, 3.2 million acts were recognized. Verification of the birth and death acts from this sample shows that 74% of them are considered complete and valid. These records will be integrated into the BALSAC database and linked together to recreate family and genealogical relations at large scale.

Integrated Sensing-Communication-Computation for Edge Artificial Intelligence

Edge artificial intelligence (AI) has been a promising solution towards 6G to empower a series of advanced techniques such as digital twin, holographic projection, semantic communications, and auto-driving, for achieving intelligence of everything. The performance of edge AI tasks, including edge learning and edge AI inference, depends on the quality of three highly coupled processes, i.e., sensing for data acquisition, computation for information extraction, and communication for information transmission. However, these three modules need to compete for network resources for enhancing their own quality-of-services. To this end, integrated sensing-communication-computation (ISCC) is of paramount significance for improving resource utilization as well as achieving the customized goals of edge AI tasks. By investigating the interplay among the three modules, this article presents various kinds of ISCC schemes for federated edge learning tasks and edge AI inference tasks in both application and physical layers.

Correlation-Aware Mutual Learning for Semi-supervised Medical Image Segmentation

Semi-supervised learning has become increasingly popular in medical image segmentation due to its ability to leverage large amounts of unlabeled data to extract additional information. However, most existing semi-supervised segmentation methods only focus on extracting information from unlabeled data, disregarding the potential of labeled data to further improve the performance of the model. In this paper, we propose a novel Correlation Aware Mutual Learning (CAML) framework that leverages labeled data to guide the extraction of information from unlabeled data. Our approach is based on a mutual learning strategy that incorporates two modules: the Cross-sample Mutual Attention Module (CMA) and the Omni-Correlation Consistency Module (OCC). The CMA module establishes dense cross-sample correlations among a group of samples, enabling the transfer of label prior knowledge to unlabeled data. The OCC module constructs omni-correlations between the unlabeled and labeled datasets and regularizes dual models by constraining the omni-correlation matrix of each sub-model to be consistent. Experiments on the Atrial Segmentation Challenge dataset demonstrate that our proposed approach outperforms state-of-the-art methods, highlighting the effectiveness of our framework in medical image segmentation tasks. The codes, pre-trained weights, and data are publicly available.

SNeL: A Structured Neuro-Symbolic Language for Entity-Based Multimodal Scene Understanding

In the evolving landscape of artificial intelligence, multimodal and Neuro-Symbolic paradigms stand at the forefront, with a particular emphasis on the identification and interaction with entities and their relations across diverse modalities. Addressing the need for complex querying and interaction in this context, we introduce SNeL (Structured Neuro-symbolic Language), a versatile query language designed to facilitate nuanced interactions with neural networks processing multimodal data. SNeL's expressive interface enables the construction of intricate queries, supporting logical and arithmetic operators, comparators, nesting, and more. This allows users to target specific entities, specify their properties, and limit results, thereby efficiently extracting information from a scene. By aligning high-level symbolic reasoning with low-level neural processing, SNeL effectively bridges the Neuro-Symbolic divide. The language's versatility extends to a variety of data types, including images, audio, and text, making it a powerful tool for multimodal scene understanding. Our evaluations demonstrate SNeL's potential to reshape the way we interact with complex neural networks, underscoring its efficacy in driving targeted information extraction and facilitating a deeper understanding of the rich semantics encapsulated in multimodal AI models.

Multi-modal Representation Learning for Social Post Location Inference

Inferring geographic locations via social posts is essential for many practical location-based applications such as product marketing, point-of-interest recommendation, and infector tracking for COVID-19. Unlike image-based location retrieval or social-post text embedding-based location inference, the combined effect of multi-modal information (i.e., post images, text, and hashtags) for social post positioning receives less attention. In this work, we collect real datasets of social posts with images, texts, and hashtags from Instagram and propose a novel Multi-modal Representation Learning Framework (MRLF) capable of fusing different modalities of social posts for location inference. MRLF integrates a multi-head attention mechanism to enhance location-salient information extraction while significantly improving location inference compared with single domain-based methods. To overcome the noisy user-generated textual content, we introduce a novel attention-based character-aware module that considers the relative dependencies between characters of social post texts and hashtags for flexible multi-model information fusion. The experimental results show that MRLF can make accurate location predictions and open a new door to understanding the multi-modal data of social posts for online inference tasks.

Flexible Grammar-Based Constrained Decoding for Language Models

LLMs have shown impressive few-shot performance across many tasks. However, they still struggle when it comes to reliably generating complex output structures, such as those required for information extraction. This limitation stems from the fact that LLMs, without fine-tuning, tend to generate free text rather than structures precisely following a specific grammar. In this work, we propose to enrich the decoding with formal grammar constraints. More concretely, given Context-Free Grammar(CFG), our framework ensures that the token generated in each decoding step would lead to a valid continuation compliant with the grammar production rules. This process guarantees the generation of valid sequences. Importantly, our framework can be readily combined with any CFG or decoding algorithm. We demonstrate that the outputs of many NLP tasks can be represented as formal languages, making them suitable for direct use in our framework. We conducted experiments with two challenging tasks involving large alphabets in their grammar (Wikidata entities and relations): information extraction and entity disambiguation. Our results with LLaMA models indicate that grammar-constrained decoding substantially outperforms unconstrained decoding and even competes with task-specific fine-tuned models. These findings suggest that integrating grammar-based constraints during decoding holds great promise in making LLMs reliably produce structured outputs, especially in setting where training data is scarce and fine-tuning is expensive.

Opportunities and Challenges for ChatGPT and Large Language Models in Biomedicine and Health

ChatGPT has drawn considerable attention from both the general public and domain experts with its remarkable text generation capabilities. This has subsequently led to the emergence of diverse applications in the field of biomedicine and health. In this work, we examine the diverse applications of large language models (LLMs), such as ChatGPT, in biomedicine and health. Specifically we explore the areas of biomedical information retrieval, question answering, medical text summarization, information extraction, and medical education, and investigate whether LLMs possess the transformative power to revolutionize these tasks or whether the distinct complexities of biomedical domain presents unique challenges. Following an extensive literature survey, we find that significant advances have been made in the field of text generation tasks, surpassing the previous state-of-the-art methods. For other applications, the advances have been modest. Overall, LLMs have not yet revolutionized the biomedicine, but recent rapid progress indicates that such methods hold great potential to provide valuable means for accelerating discovery and improving health. We also find that the use of LLMs, like ChatGPT, in the fields of biomedicine and health entails various risks and challenges, including fabricated information in its generated responses, as well as legal and privacy concerns associated with sensitive patient data. We believe this first-of-its-kind survey can provide a comprehensive overview to biomedical researchers and healthcare practitioners on the opportunities and challenges associated with using ChatGPT and other LLMs for transforming biomedicine and health.

Towards Generalized Open Information Extraction

Open Information Extraction (OpenIE) facilitates the open-domain discovery of textual facts. However, the prevailing solutions evaluate OpenIE models on in-domain test sets aside from the training corpus, which certainly violates the initial task principle of domain-independence. In this paper, we propose to advance OpenIE towards a more realistic scenario: generalizing over unseen target domains with different data distributions from the source training domains, termed Generalized OpenIE. For this purpose, we first introduce GLOBE, a large-scale human-annotated multi-domain OpenIE benchmark, to examine the robustness of recent OpenIE models to domain shifts, and the relative performance degradation of up to 70% implies the challenges of generalized OpenIE. Then, we propose DragonIE, which explores a minimalist graph expression of textual fact: directed acyclic graph, to improve the OpenIE generalization. Extensive experiments demonstrate that DragonIE beats the previous methods in both in-domain and out-of-domain settings by as much as 6.0% in F1 score absolutely, but there is still ample room for improvement.