Fine-tuning and aligning question answering models for complex information extraction tasks

The emergence of Large Language Models (LLMs) has boosted performance and possibilities in various NLP tasks. While the usage of generative AI models like ChatGPT opens up new opportunities for several business use cases, their current tendency to hallucinate fake content strongly limits their applicability to document analysis, such as information retrieval from documents. In contrast, extractive language models like question answering (QA) or passage retrieval models guarantee query results to be found within the boundaries of an according context document, which makes them candidates for more reliable information extraction in productive environments of companies. In this work we propose an approach that uses and integrates extractive QA models for improved feature extraction of German business documents such as insurance reports or medical leaflets into a document analysis solution. We further show that fine-tuning existing German QA models boosts performance for tailored extraction tasks of complex linguistic features like damage cause explanations or descriptions of medication appearance, even with using only a small set of annotated data. Finally, we discuss the relevance of scoring metrics for evaluating information extraction tasks and deduce a combined metric from Levenshtein distance, F1-Score, Exact Match and ROUGE-L to mimic the assessment criteria from human experts.

The Impact of Snippet Reliability on Misinformation in Online Health Search

Search result snippets are crucial in modern search engines, providing users with a quick overview of a website's content. Snippets help users determine the relevance of a document to their information needs, and in certain scenarios even enable them to satisfy those needs without visiting web documents. Hence, it is crucial for snippets to reliably represent the content of their corresponding documents. While this may be a straightforward requirement for some queries, it can become challenging in the complex domain of healthcare, and can lead to misinformation. This paper aims to examine snippets' reliability in representing their corresponding documents, specifically in the health domain. To achieve this, we conduct a series of user studies using Google's search results, where participants are asked to infer viewpoints of search results pertaining to queries about the effectiveness of a medical intervention for a medical condition, based solely on their titles and snippets. Our findings reveal that a considerable portion of Google's snippets (28%) failed to present any viewpoint on the intervention's effectiveness, and that 35% were interpreted by participants as having a different viewpoint compared to their corresponding documents. To address this issue, we propose a snippet extraction solution tailored directly to users' information needs, i.e., extracting snippets that summarize documents' viewpoints regarding the intervention and condition that appear in the query. User study demonstrates that our information need-focused solution outperforms the mainstream query-based approach. With only 19.67% of snippets generated by our solution reported as not presenting a viewpoint and a mere 20.33% misinterpreted by participants. These results strongly suggest that an information need-focused approach can significantly improve the reliability of extracted snippets in online health search.

CIMIL-CRC: a clinically-informed multiple instance learning framework for patient-level colorectal cancer molecular subtypes classification from H\&E stained images

Treatment approaches for colorectal cancer (CRC) are highly dependent on the molecular subtype, as immunotherapy has shown efficacy in cases with microsatellite instability (MSI) but is ineffective for the microsatellite stable (MSS) subtype. There is promising potential in utilizing deep neural networks (DNNs) to automate the differentiation of CRC subtypes by analyzing Hematoxylin and Eosin (H\&E) stained whole-slide images (WSIs). Due to the extensive size of WSIs, Multiple Instance Learning (MIL) techniques are typically explored. However, existing MIL methods focus on identifying the most representative image patches for classification, which may result in the loss of critical information. Additionally, these methods often overlook clinically relevant information, like the tendency for MSI class tumors to predominantly occur on the proximal (right side) colon. We introduce `CIMIL-CRC', a DNN framework that: 1) solves the MSI/MSS MIL problem by efficiently combining a pre-trained feature extraction model with principal component analysis (PCA) to aggregate information from all patches, and 2) integrates clinical priors, particularly the tumor location within the colon, into the model to enhance patient-level classification accuracy. We assessed our CIMIL-CRC method using the average area under the curve (AUC) from a 5-fold cross-validation experimental setup for model development on the TCGA-CRC-DX cohort, contrasting it with a baseline patch-level classification, MIL-only approach, and Clinically-informed patch-level classification approach. Our CIMIL-CRC outperformed all methods (AUROC: $0.92\pm0.002$ (95\% CI 0.91-0.92), vs. $0.79\pm0.02$ (95\% CI 0.76-0.82), $0.86\pm0.01$ (95\% CI 0.85-0.88), and $0.87\pm0.01$ (95\% CI 0.86-0.88), respectively). The improvement was statistically significant.

Detect-Order-Construct: A Tree Construction based Approach for Hierarchical Document Structure Analysis

Document structure analysis (aka document layout analysis) is crucial for understanding the physical layout and logical structure of documents, with applications in information retrieval, document summarization, knowledge extraction, etc. In this paper, we concentrate on Hierarchical Document Structure Analysis (HDSA) to explore hierarchical relationships within structured documents created using authoring software employing hierarchical schemas, such as LaTeX, Microsoft Word, and HTML. To comprehensively analyze hierarchical document structures, we propose a tree construction based approach that addresses multiple subtasks concurrently, including page object detection (Detect), reading order prediction of identified objects (Order), and the construction of intended hierarchical structure (Construct). We present an effective end-to-end solution based on this framework to demonstrate its performance. To assess our approach, we develop a comprehensive benchmark called Comp-HRDoc, which evaluates the above subtasks simultaneously. Our end-to-end system achieves state-of-the-art performance on two large-scale document layout analysis datasets (PubLayNet and DocLayNet), a high-quality hierarchical document structure reconstruction dataset (HRDoc), and our Comp-HRDoc benchmark. The Comp-HRDoc benchmark will be released to facilitate further research in this field.

PrIeD-KIE: Towards Privacy Preserved Document Key Information Extraction

In this paper, we introduce strategies for developing private Key Information Extraction (KIE) systems by leveraging large pretrained document foundation models in conjunction with differential privacy (DP), federated learning (FL), and Differentially Private Federated Learning (DP-FL). Through extensive experimentation on six benchmark datasets (FUNSD, CORD, SROIE, WildReceipts, XFUND, and DOCILE), we demonstrate that large document foundation models can be effectively fine-tuned for the KIE task under private settings to achieve adequate performance while maintaining strong privacy guarantees. Moreover, by thoroughly analyzing the impact of various training and model parameters on model performance, we propose simple yet effective guidelines for achieving an optimal privacy-utility trade-off for the KIE task under global DP. Finally, we introduce FeAm-DP, a novel DP-FL algorithm that enables efficiently upscaling global DP from a standalone context to a multi-client federated environment. We conduct a comprehensive evaluation of the algorithm across various client and privacy settings, and demonstrate its capability to achieve comparable performance and privacy guarantees to standalone DP, even when accommodating an increasing number of participating clients. Overall, our study offers valuable insights into the development of private KIE systems, and highlights the potential of document foundation models for privacy-preserved Document AI applications. To the best of authors' knowledge, this is the first work that explores privacy preserved document KIE using document foundation models.

Agent-based Learning of Materials Datasets from Scientific Literature

Advancements in machine learning and artificial intelligence are transforming materials discovery. Yet, the availability of structured experimental data remains a bottleneck. The vast corpus of scientific literature presents a valuable and rich resource of such data. However, manual dataset creation from these resources is challenging due to issues in maintaining quality and consistency, scalability limitations, and the risk of human error and bias. Therefore, in this work, we develop a chemist AI agent, powered by large language models (LLMs), to overcome these challenges by autonomously creating structured datasets from natural language text, ranging from sentences and paragraphs to extensive scientific research articles. Our chemist AI agent, Eunomia, can plan and execute actions by leveraging the existing knowledge from decades of scientific research articles, scientists, the Internet and other tools altogether. We benchmark the performance of our approach in three different information extraction tasks with various levels of complexity, including solid-state impurity doping, metal-organic framework (MOF) chemical formula, and property relations. Our results demonstrate that our zero-shot agent, with the appropriate tools, is capable of attaining performance that is either superior or comparable to the state-of-the-art fine-tuned materials information extraction methods. This approach simplifies compilation of machine learning-ready datasets for various materials discovery applications, and significantly ease the accessibility of advanced natural language processing tools for novice users in natural language. The methodology in this work is developed as an open-source software on https://github.com/AI4ChemS/Eunomia.

Improving Information Extraction on Business Documents with Specific Pre-Training Tasks

Transformer-based Language Models are widely used in Natural Language Processing related tasks. Thanks to their pre-training, they have been successfully adapted to Information Extraction in business documents. However, most pre-training tasks proposed in the literature for business documents are too generic and not sufficient to learn more complex structures. In this paper, we use LayoutLM, a language model pre-trained on a collection of business documents, and introduce two new pre-training tasks that further improve its capacity to extract relevant information. The first is aimed at better understanding the complex layout of documents, and the second focuses on numeric values and their order of magnitude. These tasks force the model to learn better-contextualized representations of the scanned documents. We further introduce a new post-processing algorithm to decode BIESO tags in Information Extraction that performs better with complex entities. Our method significantly improves extraction performance on both public (from 93.88 to 95.50 F1 score) and private (from 84.35 to 84.84 F1 score) datasets composed of expense receipts, invoices, and purchase orders.

Rethinking Cross-Attention for Infrared and Visible Image Fusion

The salient information of an infrared image and the abundant texture of a visible image can be fused to obtain a comprehensive image. As can be known, the current fusion methods based on Transformer techniques for infrared and visible (IV) images have exhibited promising performance. However, the attention mechanism of the previous Transformer-based methods was prone to extract common information from source images without considering the discrepancy information, which limited fusion performance. In this paper, by reevaluating the cross-attention mechanism, we propose an alternate Transformer fusion network (ATFuse) to fuse IV images. Our ATFuse consists of one discrepancy information injection module (DIIM) and two alternate common information injection modules (ACIIM). The DIIM is designed by modifying the vanilla cross-attention mechanism, which can promote the extraction of the discrepancy information of the source images. Meanwhile, the ACIIM is devised by alternately using the vanilla cross-attention mechanism, which can fully mine common information and integrate long dependencies. Moreover, the successful training of ATFuse is facilitated by a proposed segmented pixel loss function, which provides a good trade-off for texture detail and salient structure preservation. The qualitative and quantitative results on public datasets indicate our ATFFuse is effective and superior compared to other state-of-the-art methods.

Evolutionary Multi-Objective Optimization of Large Language Model Prompts for Balancing Sentiments

The advent of large language models (LLMs) such as ChatGPT has attracted considerable attention in various domains due to their remarkable performance and versatility. As the use of these models continues to grow, the importance of effective prompt engineering has come to the fore. Prompt optimization emerges as a crucial challenge, as it has a direct impact on model performance and the extraction of relevant information. Recently, evolutionary algorithms (EAs) have shown promise in addressing this issue, paving the way for novel optimization strategies. In this work, we propose a evolutionary multi-objective (EMO) approach specifically tailored for prompt optimization called EMO-Prompts, using sentiment analysis as a case study. We use sentiment analysis capabilities as our experimental targets. Our results demonstrate that EMO-Prompts effectively generates prompts capable of guiding the LLM to produce texts embodying two conflicting emotions simultaneously.

Consistency Guided Knowledge Retrieval and Denoising in LLMs for Zero-shot Document-level Relation Triplet Extraction

Document-level Relation Triplet Extraction (DocRTE) is a fundamental task in information systems that aims to simultaneously extract entities with semantic relations from a document. Existing methods heavily rely on a substantial amount of fully labeled data. However, collecting and annotating data for newly emerging relations is time-consuming and labor-intensive. Recent advanced Large Language Models (LLMs), such as ChatGPT and LLaMA, exhibit impressive long-text generation capabilities, inspiring us to explore an alternative approach for obtaining auto-labeled documents with new relations. In this paper, we propose a Zero-shot Document-level Relation Triplet Extraction (ZeroDocRTE) framework, which generates labeled data by retrieval and denoising knowledge from LLMs, called GenRDK. Specifically, we propose a chain-of-retrieval prompt to guide ChatGPT to generate labeled long-text data step by step. To improve the quality of synthetic data, we propose a denoising strategy based on the consistency of cross-document knowledge. Leveraging our denoised synthetic data, we proceed to fine-tune the LLaMA2-13B-Chat for extracting document-level relation triplets. We perform experiments for both zero-shot document-level relation and triplet extraction on two public datasets. The experimental results illustrate that our GenRDK framework outperforms strong baselines.