Dispersed Structured Light for Hyperspectral 3D Imaging

Hyperspectral 3D imaging aims to acquire both depth and spectral information of a scene. However, existing methods are either prohibitively expensive and bulky or compromise on spectral and depth accuracy. In this work, we present Dispersed Structured Light (DSL), a cost-effective and compact method for accurate hyperspectral 3D imaging. DSL modifies a traditional projector-camera system by placing a sub-millimeter thick diffraction grating film front of the projector. The grating disperses structured light based on light wavelength. To utilize the dispersed structured light, we devise a model for dispersive projection image formation and a per-pixel hyperspectral 3D reconstruction method. We validate DSL by instantiating a compact experimental prototype. DSL achieves spectral accuracy of 18.8nm full-width half-maximum (FWHM) and depth error of 1mm. We demonstrate that DSL outperforms prior work on practical hyperspectral 3D imaging. DSL promises accurate and practical hyperspectral 3D imaging for diverse application domains, including computer vision and graphics, cultural heritage, geology, and biology.

A Compact Implicit Neural Representation for Efficient Storage of Massive 4D Functional Magnetic Resonance Imaging

Functional Magnetic Resonance Imaging (fMRI) data is a kind of widely used four-dimensional biomedical data, demanding effective compression but presenting unique challenges for compression due to its intricate temporal dynamics, low signal-to-noise ratio, and complicated underlying redundancies. This paper reports a novel compression paradigm specifically tailored for fMRI data based on Implicit Neural Representation (INR). The proposed approach focuses on removing the various redundancies among the time series, including (i) conducting spatial correlation modeling for intra-region dynamics, (ii) decomposing reusable neuronal activation patterns, and using proper initialization together with nonlinear fusion to describe the inter-region similarity. The above scheme properly incorporates the unique features of fMRI data, and experimental results on publicly available datasets demonstrate the effectiveness of the proposed method, surpassing state-of-the-art algorithms in both conventional image quality evaluation metrics and fMRI downstream tasks. This work in this paper paves the way for sharing massive fMRI data at low bandwidth and high fidelity.

GPT-4 Vision on Medical Image Classification -- A Case Study on COVID-19 Dataset

This technical report delves into the application of GPT-4 Vision (GPT-4V) in the nuanced realm of COVID-19 image classification, leveraging the transformative potential of in-context learning to enhance diagnostic processes.

The curse of language biases in remote sensing VQA: the role of spatial attributes, language diversity, and the need for clear evaluation

Remote sensing visual question answering (RSVQA) opens new opportunities for the use of overhead imagery by the general public, by enabling human-machine interaction with natural language. Building on the recent advances in natural language processing and computer vision, the goal of RSVQA is to answer a question formulated in natural language about a remote sensing image. Language understanding is essential to the success of the task, but has not yet been thoroughly examined in RSVQA. In particular, the problem of language biases is often overlooked in the remote sensing community, which can impact model robustness and lead to wrong conclusions about the performances of the model. Thus, the present work aims at highlighting the problem of language biases in RSVQA with a threefold analysis strategy: visual blind models, adversarial testing and dataset analysis. This analysis focuses both on model and data. Moreover, we motivate the use of more informative and complementary evaluation metrics sensitive to the issue. The gravity of language biases in RSVQA is then exposed for all of these methods with the training of models discarding the image data and the manipulation of the visual input during inference. Finally, a detailed analysis of question-answer distribution demonstrates the root of the problem in the data itself. Thanks to this analytical study, we observed that biases in remote sensing are more severe than in standard VQA, likely due to the specifics of existing remote sensing datasets for the task, e.g. geographical similarities and sparsity, as well as a simpler vocabulary and question generation strategies. While new, improved and less-biased datasets appear as a necessity for the development of the promising field of RSVQA, we demonstrate that more informed, relative evaluation metrics remain much needed to transparently communicate results of future RSVQA methods.

Stable Segment Anything Model

The Segment Anything Model (SAM) achieves remarkable promptable segmentation given high-quality prompts which, however, often require good skills to specify. To make SAM robust to casual prompts, this paper presents the first comprehensive analysis on SAM's segmentation stability across a diverse spectrum of prompt qualities, notably imprecise bounding boxes and insufficient points. Our key finding reveals that given such low-quality prompts, SAM's mask decoder tends to activate image features that are biased towards the background or confined to specific object parts. To mitigate this issue, our key idea consists of adjusting the sampling locations of image feature using learnable deformable offsets, while the original SAM model architecture and weights remain unchanged. Consequently, our deformable sampling plugin (DSP) enables SAM to adaptively shift attention to the prompted target regions in a data-driven manner, facilitated by our effective robust training strategy (RTS). During inference, dynamic routing plugin (DRP) is proposed that toggles SAM between the deformable and regular grid sampling modes, conditioned on the input prompt quality. Thus, our solution, termed Stable-SAM, is one of its kind focusing on solely adjusting feature sampling locations, which offers several advantages: 1) improved SAM's segmentation stability across a wide range of prompt qualities, while 2) retaining SAM's powerful promptable segmentation efficiency and generality, with 3) minimal learnable parameters (0.08 M) and fast adaptation (by 1 training epoch). Extensive experiments across multiple datasets validate the effectiveness and advantages of our approach, underscoring Stable-SAM as a more robust solution for segmenting anything. Codes will be released upon acceptance.

Spectro-ViT: A Vision Transformer Model for GABA-edited MRS Reconstruction Using Spectrograms

Purpose: To investigate the use of a Vision Transformer (ViT) to reconstruct/denoise GABA-edited magnetic resonance spectroscopy (MRS) from a quarter of the typically acquired number of transients using spectrograms. Theory and Methods: A quarter of the typically acquired number of transients collected in GABA-edited MRS scans are pre-processed and converted to a spectrogram image representation using the Short-Time Fourier Transform (STFT). The image representation of the data allows the adaptation of a pre-trained ViT for reconstructing GABA-edited MRS spectra (Spectro-ViT). The Spectro-ViT is fine-tuned and then tested using \textit{in vivo} GABA-edited MRS data. The Spectro-ViT performance is compared against other models in the literature using spectral quality metrics and estimated metabolite concentration values. Results: The Spectro-ViT model significantly outperformed all other models in four out of five quantitative metrics (mean squared error, shape score, GABA+/water fit error, and full width at half maximum). The metabolite concentrations estimated (GABA+/water, GABA+/Cr, and Glx/water) were consistent with the metabolite concentrations estimated using typical GABA-edited MRS scans reconstructed with the full amount of typically collected transients. Conclusion: The proposed Spectro-ViT model achieved state-of-the-art results in reconstructing GABA-edited MRS, and the results indicate these scans could be up to four times faster.

BS-Diff: Effective Bone Suppression Using Conditional Diffusion Models from Chest X-Ray Images

Chest X-rays (CXRs) are commonly utilized as a low-dose modality for lung screening. Nonetheless, the efficacy of CXRs is somewhat impeded, given that approximately 75% of the lung area overlaps with bone, which in turn hampers the detection and diagnosis of diseases. As a remedial measure, bone suppression techniques have been introduced. The current dual-energy subtraction imaging technique in the clinic requires costly equipment and subjects being exposed to high radiation. To circumvent these issues, deep learning-based image generation algorithms have been proposed. However, existing methods fall short in terms of producing high-quality images and capturing texture details, particularly with pulmonary vessels. To address these issues, this paper proposes a new bone suppression framework, termed BS-Diff, that comprises a conditional diffusion model equipped with a U-Net architecture and a simple enhancement module to incorporate an autoencoder. Our proposed network cannot only generate soft tissue images with a high bone suppression rate but also possesses the capability to capture fine image details. Additionally, we compiled the largest dataset since 2010, including data from 120 patients with high-definition, high-resolution paired CXRs and soft tissue images collected by our affiliated hospital. Extensive experiments, comparative analyses, ablation studies, and clinical evaluations indicate that the proposed BS-Diff outperforms several bone-suppression models across multiple metrics.

A comprehensive survey on deep active learning and its applications in medical image analysis

Deep learning has achieved widespread success in medical image analysis, leading to an increasing demand for large-scale expert-annotated medical image datasets. Yet, the high cost of annotating medical images severely hampers the development of deep learning in this field. To reduce annotation costs, active learning aims to select the most informative samples for annotation and train high-performance models with as few labeled samples as possible. In this survey, we review the core methods of active learning, including the evaluation of informativeness and sampling strategy. For the first time, we provide a detailed summary of the integration of active learning with other label-efficient techniques, such as semi-supervised, self-supervised learning, and so on. Additionally, we also highlight active learning works that are specifically tailored to medical image analysis. In the end, we offer our perspectives on the future trends and challenges of active learning and its applications in medical image analysis.

RAUNE-Net: A Residual and Attention-Driven Underwater Image Enhancement Method

Underwater image enhancement (UIE) poses challenges due to distinctive properties of the underwater environment, including low contrast, high turbidity, visual blurriness, and color distortion. In recent years, the application of deep learning has quietly revolutionized various areas of scientific research, including UIE. However, existing deep learning-based UIE methods generally suffer from issues of weak robustness and limited adaptability. In this paper, inspired by residual and attention mechanisms, we propose a more reliable and reasonable UIE network called RAUNE-Net by employing residual learning of high-level features at the network's bottle-neck and two aspects of attention manipulations in the down-sampling procedure. Furthermore, we collect and create two datasets specifically designed for evaluating UIE methods, which contains different types of underwater distortions and degradations. The experimental validation demonstrates that our method obtains promising objective performance and consistent visual results across various real-world underwater images compared to other eight UIE methods. Our example code and datasets are publicly available at https://github.com/fansuregrin/RAUNE-Net.

Importance of Feature Extraction in the Calculation of Fréchet Distance for Medical Imaging

Fr\'echet Inception Distance is a widely used metric for evaluating synthetic image quality that utilizes an ImageNet-trained InceptionV3 network as a feature extractor. However, its application in medical imaging lacks a standard feature extractor, leading to biased and inconsistent comparisons. This study aimed to compare state-of-the-art feature extractors for computing Fr\'echet Distances (FDs) in medical imaging. A StyleGAN2 network was trained with data augmentation techniques tailored for limited data domains on datasets comprising three medical imaging modalities and four anatomical locations. Human evaluation of generative quality (via a visual Turing test) was compared to FDs calculated using ImageNet-trained InceptionV3, ResNet50, SwAV, DINO, and Swin Transformer architectures, in addition to an InceptionV3 network trained on a large medical dataset, RadImageNet. All ImageNet-based extractors were consistent with each other, but only SwAV was significantly correlated with medical expert judgment. The RadImageNet-based FD showed volatility and lacked correlation with human judgment. Caution is advised when using medical image-trained extraction networks in the FD calculation. These networks should be rigorously evaluated on the imaging modality under consideration and publicly released. ImageNet-based extractors, while imperfect, are consistent and widely understood. Training extraction networks with SwAV is a promising approach for synthetic medical image evaluation.