Recently, weakly-supervised image segmentation using weak annotations like scribbles has gained great attention in computer vision and medical image analysis, since such annotations are much easier to obtain compared to time-consuming and labor-intensive labeling at the pixel/voxel level. However, due to a lack of structure supervision on regions of interest (ROIs), existing scribble-based methods suffer from poor boundary localization. Furthermore, most current methods are designed for 2D image segmentation, which do not fully leverage the volumetric information if directly applied to each image slice. In this paper, we propose a scribble-based volumetric image segmentation, Scribble2D5, which tackles 3D anisotropic image segmentation and aims to its improve boundary prediction. To achieve this, we augment a 2.5D attention UNet with a proposed label propagation module to extend semantic information from scribbles and use a combination of static and active boundary prediction to learn ROI's boundary and regularize its shape. Also, we propose an optional add-on component, which incorporates the shape prior information from unpaired segmentation masks to further improve model accuracy. Extensive experiments on three public datasets and one private dataset demonstrate our Scribble2D5 achieves state-of-the-art performance on volumetric image segmentation using scribbles and shape prior if available.
The future success of the Navy will depend, in part, on artificial intelligence. In practice, many artificially intelligent algorithms, and in particular deep learning models, rely on continual learning to maintain performance in dynamic environments. The software requires adaptation to maintain its initial level of performance in unseen situations. However, if not monitored properly, continual learning may lead to several issues including catastrophic forgetting in which a trained model forgets previously learned tasks when being retrained on new data. The authors created a new framework for safely performing continual learning with the goal of pairing this safety framework with a deep learning computer vision algorithm to allow for safe and high-performing automatic deck tracking on carriers and amphibious assault ships. The safety framework includes several features, such as an ensemble of convolutional neural networks to perform image classification, a manager to record confidences and determine the best answer from the ensemble, a model of the environment to predict when the system may fail to meet minimum performance metrics, a performance monitor to log system and domain performance and check against requirements, and a retraining component to update the ensemble and manager to maintain performance. The authors validated the proposed method using extensive simulation studies based on dynamic image classification. The authors showed the safety framework could probabilistically detect out of distribution data. The results also show the framework can detect when the system is no longer performing safely and can significantly extend the working envelope of an image classifier.
Medical image segmentation is a challenging task, made more difficult by many datasets' limited size and annotations. Denoising diffusion probabilistic models (DDPM) have recently shown promise in modelling the distribution of natural images and were successfully applied to various medical imaging tasks. This work focuses on semi-supervised image segmentation using diffusion models, particularly addressing domain generalisation. Firstly, we demonstrate that smaller diffusion steps generate latent representations that are more robust for downstream tasks than larger steps. Secondly, we use this insight to propose an improved esembling scheme that leverages information-dense small steps and the regularising effect of larger steps to generate predictions. Our model shows significantly better performance in domain-shifted settings while retaining competitive performance in-domain. Overall, this work highlights the potential of DDPMs for semi-supervised medical image segmentation and provides insights into optimising their performance under domain shift.
Automated medical image segmentation is becoming increasingly crucial in modern clinical practice, driven by the growing demand for precise diagnoses, the push towards personalized treatment plans, and advancements in machine learning algorithms, especially the incorporation of deep learning methods. While convolutional neural networks (CNNs) have been prevalent among these methods, the remarkable potential of Transformer-based models for computer vision tasks is gaining more acknowledgment. To harness the advantages of both CNN-based and Transformer-based models, we propose a simple yet effective UNet-Transformer (seUNet-Trans) model for medical image segmentation. In our approach, the UNet model is designed as a feature extractor to generate multiple feature maps from the input images, and these maps are propagated into a bridge layer, which sequentially connects the UNet and the Transformer. In this stage, we employ the pixel-level embedding technique without position embedding vectors to make the model more efficient. Moreover, we applied spatial-reduction attention in the Transformer to reduce the computational/memory overhead. By leveraging the UNet architecture and the self-attention mechanism, our model not only preserves both local and global context information but also captures long-range dependencies between input elements. The proposed model is extensively experimented on five medical image segmentation datasets, including polyp segmentation, to demonstrate its efficacy. A comparison with several state-of-the-art segmentation models on these datasets shows the superior performance of seUNet-Trans.
In recent years, continuous latent space (CLS) and discrete latent space (DLS) deep learning models have been proposed for medical image analysis for improved performance. However, these models encounter distinct challenges. CLS models capture intricate details but often lack interpretability in terms of structural representation and robustness due to their emphasis on low-level features. Conversely, DLS models offer interpretability, robustness, and the ability to capture coarse-grained information thanks to their structured latent space. However, DLS models have limited efficacy in capturing fine-grained details. To address the limitations of both DLS and CLS models, we propose SynergyNet, a novel bottleneck architecture designed to enhance existing encoder-decoder segmentation frameworks. SynergyNet seamlessly integrates discrete and continuous representations to harness complementary information and successfully preserves both fine and coarse-grained details in the learned representations. Our extensive experiment on multi-organ segmentation and cardiac datasets demonstrates that SynergyNet outperforms other state of the art methods, including TransUNet: dice scores improving by 2.16%, and Hausdorff scores improving by 11.13%, respectively. When evaluating skin lesion and brain tumor segmentation datasets, we observe a remarkable improvement of 1.71% in Intersection-over Union scores for skin lesion segmentation and of 8.58% for brain tumor segmentation. Our innovative approach paves the way for enhancing the overall performance and capabilities of deep learning models in the critical domain of medical image analysis.
There exist a wide range of single number metrics for assessing performance of classification algorithms, including AUC and the F1-score (Wikipedia lists 17 such metrics, with 27 different names). In this article, I propose a new metric to answer the following question: when an algorithm is tuned so that it can no longer distinguish labelled cats from real cats, how often does a randomly chosen image that has been labelled as containing a cat actually contain a cat? The steps to construct this metric are as follows. First, we set a threshold score such that when the algorithm is shown two randomly-chosen images -- one that has a score greater than the threshold (i.e. a picture labelled as containing a cat) and another from those pictures that really does contain a cat -- the probability that the image with the highest score is the one chosen from the set of real cat images is 50\%. At this decision threshold, the set of positively labelled images are indistinguishable from the set of images which are positive. Then, as a second step, we measure performance by asking how often a randomly chosen picture from those labelled as containing a cat actually contains a cat. This metric can be thought of as {\it precision at the indistinguishability threshold}. While this new metric doesn't address the tradeoff between precision and recall inherent to all such metrics, I do show why this method avoids pitfalls that can occur when using, for example AUC, and it is better motivated than, for example, the F1-score.
360{\deg} spherical images have advantages of wide view field, and are typically projected on a planar plane for processing, which is known as equirectangular image. The object shape in equirectangular images can be distorted and lack translation invariance. In addition, there are few publicly dataset of equirectangular images with labels, which presents a challenge for standard CNNs models to process equirectangular images effectively. To tackle this problem, we propose a methodology for converting a perspective image into equirectangular image. The inverse transformation of the spherical center projection and the equidistant cylindrical projection are employed. This enables the standard CNNs to learn the distortion features at different positions in the equirectangular image and thereby gain the ability to semantically the equirectangular image. The parameter, {\phi}, which determines the projection position of the perspective image, has been analyzed using various datasets and models, such as UNet, UNet++, SegNet, PSPNet, and DeepLab v3+. The experiments demonstrate that an optimal value of {\phi} for effective semantic segmentation of equirectangular images is 6{\pi}/16 for standard CNNs. Compared with the other three types of methods (supervised learning, unsupervised learning and data augmentation), the method proposed in this paper has the best average IoU value of 43.76%. This value is 23.85%, 10.7% and 17.23% higher than those of other three methods, respectively.
In the age of technology, data is an increasingly important resource. This importance is growing in the field of Artificial Intelligence (AI), where sub fields such as Machine Learning (ML) need more and more data to achieve better results. Internet of Things (IoT) is the connection of sensors and smart objects to collect and exchange data, in addition to achieving many other tasks. A huge amount of the resource desired, data, is stored in mobile devices, sensors and other Internet of Things (IoT) devices, but remains there due to data protection restrictions. At the same time these devices do not have enough data or computational capacity to train good models. Moreover, transmitting, storing and processing all this data on a centralised server is problematic. Federated Learning (FL) provides an innovative solution that allows devices to learn in a collaborative way. More importantly, it accomplishes this without violating data protection laws. FL is currently growing, and there are several solutions that implement it. This article presents a prototype of a FL solution where the IoT devices used were raspberry pi boards. The results compare the performance of a solution of this type with those obtained in traditional approaches. In addition, the FL solution performance was tested in a hostile environment. A convolutional neural network (CNN) and a image data set were used. The results show the feasibility and usability of these techniques, although in many cases they do not reach the performance of traditional approaches.
In this paper, we present our solution to the New frontiers for Zero-shot Image Captioning Challenge. Different from the traditional image captioning datasets, this challenge includes a larger new variety of visual concepts from many domains (such as COVID-19) as well as various image types (photographs, illustrations, graphics). For the data level, we collect external training data from Laion-5B, a large-scale CLIP-filtered image-text dataset. For the model level, we use OFA, a large-scale visual-language pre-training model based on handcrafted templates, to perform the image captioning task. In addition, we introduce contrastive learning to align image-text pairs to learn new visual concepts in the pre-training stage. Then, we propose a similarity-bucket strategy and incorporate this strategy into the template to force the model to generate higher quality and more matching captions. Finally, by retrieval-augmented strategy, we construct a content-rich template, containing the most relevant top-k captions from other image-text pairs, to guide the model in generating semantic-rich captions. Our method ranks first on the leaderboard, achieving 105.17 and 325.72 Cider-Score in the validation and test phase, respectively.
Coral reefs are vital for marine biodiversity, coastal protection, and supporting human livelihoods globally. However, they are increasingly threatened by mass bleaching events, pollution, and unsustainable practices with the advent of climate change. Monitoring the health of these ecosystems is crucial for effective restoration and management. Current methods for creating benthic composition maps often compromise between spatial coverage and resolution. In this paper, we introduce BenthIQ, a multi-label semantic segmentation network designed for high-precision classification of underwater substrates, including live coral, algae, rock, and sand. Although commonly deployed CNNs are limited in learning long-range semantic information, transformer-based models have recently achieved state-of-the-art performance in vision tasks such as object detection and image classification. We integrate the hierarchical Swin Transformer as the backbone of a U-shaped encoder-decoder architecture for local-global semantic feature learning. Using a real-world case study in French Polynesia, we demonstrate that our approach outperforms traditional CNN and attention-based models on pixel-wise classification of shallow reef imagery.