We apply convolutional neural networks to identify between malaria infected and non-infected segmented cells from the thin blood smear slide images. We optimize our model to find over 95% accuracy in malaria cell detection. We also apply Canny image processing to reduce training file size while maintaining comparable accuracy (~ 94%).
Kidney DCE-MRI aims at both qualitative assessment of kidney anatomy and quantitative assessment of kidney function by estimating the tracer kinetic (TK) model parameters. Accurate estimation of TK model parameters requires an accurate measurement of the arterial input function (AIF) with high temporal resolution. Accelerated imaging is used to achieve high temporal resolution, which yields under-sampling artifacts in the reconstructed images. Compressed sensing (CS) methods offer a variety of reconstruction options. Most commonly, sparsity of temporal differences is encouraged for regularization to reduce artifacts. Increasing regularization in CS methods removes the ambient artifacts but also over-smooths the signal temporally which reduces the parameter estimation accuracy. In this work, we propose a single image trained deep neural network to reduce MRI under-sampling artifacts without reducing the accuracy of functional imaging markers. Instead of regularizing with a penalty term in optimization, we promote regularization by generating images from a lower dimensional representation. In this manuscript we motivate and explain the lower dimensional input design. We compare our approach to CS reconstructions with multiple regularization weights. Proposed approach results in kidney biomarkers that are highly correlated with the ground truth markers estimated using the CS reconstruction which was optimized for functional analysis. At the same time, the proposed approach reduces the artifacts in the reconstructed images.
An object detection pipeline comprises a camera that captures the scene and an object detector that processes these images. The quality of the images directly affects the performance of the object detector. Many works nowadays focus either on improving the image quality or improving the object detection models independently, but neglect the importance of joint optimization of the two subsystems. In this paper, we first empirically analyze the influence of seven parameters (quantization, compression, resolution, color model, image distortion, gamma correction, additional channels) in remote sensing applications. For our experiments, we utilize three UAV data sets from different domains and a mixture of large and small state-of-the-art object detector models to provide an extensive evaluation of the influence of the pipeline parameters. Additionally, we realize an object detection pipeline prototype on an embedded platform for an UAV and give a best practice recommendation for building object detection pipelines based on our findings. We show that not all parameters have an equal impact on detection accuracy and data throughput, and that by using a suitable compromise between parameters we are able to improve detection accuracy for lightweight object detection models, while keeping the same data throughput.
Deep Learning models are highly susceptible to adversarial manipulations that can lead to catastrophic consequences. One of the most effective methods to defend against such disturbances is adversarial training but at the cost of generalization of unseen attacks and transferability across models. In this paper, we propose a robust defense against adversarial attacks, which is model agnostic and generalizable to unseen adversaries. Initially, with a baseline model, we extract the latent representations for each class and adaptively cluster the latent representations that share a semantic similarity. We obtain the distributions for the clustered latent representations and from their originating images, we learn semantic reconstruction dictionaries (SRD). We adversarially train a new model constraining the latent space representation to minimize the distance between the adversarial latent representation and the true cluster distribution. To purify the image, we decompose the input into low and high-frequency components. The high-frequency component is reconstructed based on the most adequate SRD from the clean dataset. In order to evaluate the most adequate SRD, we rely on the distance between robust latent representations and semantic cluster distributions. The output is a purified image with no perturbation. Image purification on CIFAR-10 and ImageNet-10 using our proposed method improved the accuracy by more than 10% compared to state-of-the-art results.
Image guided depth completion is the task of generating a dense depth map from a sparse depth map and a high quality image. In this task, how to fuse the color and depth modalities plays an important role in achieving good performance. This paper proposes a two-branch backbone that consists of a color-dominant branch and a depth-dominant branch to exploit and fuse two modalities thoroughly. More specifically, one branch inputs a color image and a sparse depth map to predict a dense depth map. The other branch takes as inputs the sparse depth map and the previously predicted depth map, and outputs a dense depth map as well. The depth maps predicted from two branches are complimentary to each other and therefore they are adaptively fused. In addition, we also propose a simple geometric convolutional layer to encode 3D geometric cues. The geometric encoded backbone conducts the fusion of different modalities at multiple stages, leading to good depth completion results. We further implement a dilated and accelerated CSPN++ to refine the fused depth map efficiently. The proposed full model ranks 1st in the KITTI depth completion online leaderboard at the time of submission. It also infers much faster than most of the top ranked methods. The code of this work will be available at https://github.com/JUGGHM/PENet_ICRA2021.
Deep networks are now ubiquitous in large-scale multi-center imaging studies. However, the direct aggregation of images across sites is contraindicated for downstream statistical and deep learning-based image analysis due to inconsistent contrast, resolution, and noise. To this end, in the absence of paired data, variations of Cycle-consistent Generative Adversarial Networks have been used to harmonize image sets between a source and target domain. Importantly, these methods are prone to instability, contrast inversion, intractable manipulation of pathology, and steganographic mappings which limit their reliable adoption in real-world medical imaging. In this work, based on an underlying assumption that morphological shape is consistent across imaging sites, we propose a segmentation-renormalized image translation framework to reduce inter-scanner heterogeneity while preserving anatomical layout. We replace the affine transformations used in the normalization layers within generative networks with trainable scale and shift parameters conditioned on jointly learned anatomical segmentation embeddings to modulate features at every level of translation. We evaluate our methodologies against recent baselines across several imaging modalities (T1w MRI, FLAIR MRI, and OCT) on datasets with and without lesions. Segmentation-renormalization for translation GANs yields superior image harmonization as quantified by Inception distances, demonstrates improved downstream utility via post-hoc segmentation accuracy, and improved robustness to translation perturbation and self-adversarial attacks.
Large datasets' availability is catalyzing a rapid expansion of deep learning in general and computer vision in particular. At the same time, in many domains, a sufficient amount of training data is lacking, which may become an obstacle to the practical application of computer vision techniques. This paper challenges small and imbalanced datasets based on the example of a plant phenomics domain. We introduce an image augmentation framework, which enables us to extremely enlarge the number of training samples while providing the data for such tasks as object detection, semantic segmentation, instance segmentation, object counting, image denoising, and classification. We prove that our augmentation method increases model performance when only a few training samples are available. In our experiment, we use the DeepLabV3 model on semantic segmentation tasks with Arabidopsis and Nicotiana tabacum image dataset. The obtained result shows a 9% relative increase in model performance compared to the basic image augmentation techniques.
Generative models such as the variational autoencoder (VAE) and the generative adversarial networks (GAN) have proven to be incredibly powerful for the generation of synthetic data that preserves statistical properties and utility of real-world datasets, especially in the context of image and natural language text. Nevertheless, until now, there has no successful demonstration of how to apply either method for generating useful physiological sensory data. The state-of-the-art techniques in this context have achieved only limited success. We present PHYSIOGAN, a generative model to produce high fidelity synthetic physiological sensor data readings. PHYSIOGAN consists of an encoder, decoder, and a discriminator. We evaluate PHYSIOGAN against the state-of-the-art techniques using two different real-world datasets: ECG classification and activity recognition from motion sensors datasets. We compare PHYSIOGAN to the baseline models not only the accuracy of class conditional generation but also the sample diversity and sample novelty of the synthetic datasets. We prove that PHYSIOGAN generates samples with higher utility than other generative models by showing that classification models trained on only synthetic data generated by PHYSIOGAN have only 10% and 20% decrease in their classification accuracy relative to classification models trained on the real data. Furthermore, we demonstrate the use of PHYSIOGAN for sensor data imputation in creating plausible results.
Active learning is a promising alternative to alleviate the issue of high annotation cost in the computer vision tasks by consciously selecting more informative samples to label. Active learning for object detection is more challenging and existing efforts on it are relatively rare. In this paper, we propose a novel hybrid approach to address this problem, where the instance-level uncertainty and diversity are jointly considered in a bottom-up manner. To balance the computational complexity, the proposed approach is designed as a two-stage procedure. At the first stage, an Entropy-based Non-Maximum Suppression (ENMS) is presented to estimate the uncertainty of every image, which performs NMS according to the entropy in the feature space to remove predictions with redundant information gains. At the second stage, a diverse prototype (DivProto) strategy is explored to ensure the diversity across images by progressively converting it into the intra-class and inter-class diversities of the entropy-based class-specific prototypes. Extensive experiments are conducted on MS COCO and Pascal VOC, and the proposed approach achieves state of the art results and significantly outperforms the other counterparts, highlighting its superiority.
Stereo video super-resolution (SVSR) aims to enhance the spatial resolution of the low-resolution video by reconstructing the high-resolution video. The key challenges in SVSR are preserving the stereo-consistency and temporal-consistency, without which viewers may experience 3D fatigue. There are several notable works on stereoscopic image super-resolution, but there is little research on stereo video super-resolution. In this paper, we propose a novel Transformer-based model for SVSR, namely Trans-SVSR. Trans-SVSR comprises two key novel components: a spatio-temporal convolutional self-attention layer and an optical flow-based feed-forward layer that discovers the correlation across different video frames and aligns the features. The parallax attention mechanism (PAM) that uses the cross-view information to consider the significant disparities is used to fuse the stereo views. Due to the lack of a benchmark dataset suitable for the SVSR task, we collected a new stereoscopic video dataset, SVSR-Set, containing 71 full high-definition (HD) stereo videos captured using a professional stereo camera. Extensive experiments on the collected dataset, along with two other datasets, demonstrate that the Trans-SVSR can achieve competitive performance compared to the state-of-the-art methods. Project code and additional results are available at https://github.com/H-deep/Trans-SVSR/