Medical image quality assessment is an important aspect of image acquisition, as poor-quality images may lead to misdiagnosis. Manual labelling of image quality is a tedious task for population studies and can lead to misleading results. While much research has been done on automated analysis of image quality to address this issue, relatively little work has been done to explain the methodologies. In this work, we propose an explainable image quality assessment system and validate our idea on two different objectives which are foreign object detection on Chest X-Rays (Object-CXR) and Left Ventricular Outflow Tract (LVOT) detection on Cardiac Magnetic Resonance (CMR) volumes. We apply a variety of techniques to measure the faithfulness of the saliency detectors, and our explainable pipeline relies on NormGrad, an algorithm which can efficiently localise image quality issues with saliency maps of the classifier. We compare NormGrad with a range of saliency detection methods and illustrate its superior performance as a result of applying these methodologies for measuring the faithfulness of the saliency detectors. We see that NormGrad has significant gains over other saliency detectors by reaching a repeated Pointing Game score of 0.853 for Object-CXR and 0.611 for LVOT datasets.
Background: MR-based subchondral bone effectively predicts knee osteoarthritis. However, its clinical application is limited by the cost and time of MR. Purpose: We aim to develop a novel distillation-learning-based method named SRRD for subchondral bone microstructural analysis using easily-acquired CT images, which leverages paired MR images to enhance the CT-based analysis model during training. Materials and Methods: Knee joint images of both CT and MR modalities were collected from October 2020 to May 2021. Firstly, we developed a GAN-based generative model to transform MR images into CT images, which was used to establish the anatomical correspondence between the two modalities. Next, we obtained numerous patches of subchondral bone regions of MR images, together with their trabecular parameters (BV / TV, Tb. Th, Tb. Sp, Tb. N) from the corresponding CT image patches via regression. The distillation-learning technique was used to train the regression model and transfer MR structural information to the CT-based model. The regressed trabecular parameters were further used for knee osteoarthritis classification. Results: A total of 80 participants were evaluated. CT-based regression results of trabecular parameters achieved intra-class correlation coefficients (ICCs) of 0.804, 0.773, 0.711, and 0.622 for BV / TV, Tb. Th, Tb. Sp, and Tb. N, respectively. The use of distillation learning significantly improved the performance of the CT-based knee osteoarthritis classification method using the CNN approach, yielding an AUC score of 0.767 (95% CI, 0.681-0.853) instead of 0.658 (95% CI, 0.574-0.742) (p<.001). Conclusions: The proposed SRRD method showed high reliability and validity in MR-CT registration, regression, and knee osteoarthritis classification, indicating the feasibility of subchondral bone microstructural analysis based on CT images.
Acute Lymphoblastic Leukemia (ALL) is one of the most common types of childhood blood cancer. The quick start of the treatment process is critical to saving the patient's life, and for this reason, early diagnosis of this disease is essential. Examining the blood smear images of these patients is one of the methods used by expert doctors to diagnose this disease. Deep learning-based methods have numerous applications in medical fields, as they have significantly advanced in recent years. ALL diagnosis is not an exception in this field, and several machine learning-based methods for this problem have been proposed. In previous methods, high diagnostic accuracy was reported, but our work showed that this alone is not sufficient, as it can lead to models taking shortcuts and not making meaningful decisions. This issue arises due to the small size of medical training datasets. To address this, we constrained our model to follow a pipeline inspired by experts' work. We also demonstrated that, since a judgement based on only one image is insufficient, redefining the problem as a multiple-instance learning problem is necessary for achieving a practical result. Our model is the first to provide a solution to this problem in a multiple-instance learning setup. We introduced a novel pipeline for diagnosing ALL that approximates the process used by hematologists, is sensitive to disease biomarkers, and achieves an accuracy of 96.15%, an F1-score of 94.24%, a sensitivity of 97.56%, and a specificity of 90.91% on ALL IDB 1. Our method was further evaluated on an out-of-distribution dataset, which posed a challenging test and had acceptable performance. Notably, our model was trained on a relatively small dataset, highlighting the potential for our approach to be applied to other medical datasets with limited data availability.
Recent deep learning models can efficiently combine inputs from different modalities (e.g., images and text) and learn to align their latent representations, or to translate signals from one domain to another (as in image captioning, or text-to-image generation). However, current approaches mainly rely on brute-force supervised training over large multimodal datasets. In contrast, humans (and other animals) can learn useful multimodal representations from only sparse experience with matched cross-modal data. Here we evaluate the capabilities of a neural network architecture inspired by the cognitive notion of a "Global Workspace": a shared representation for two (or more) input modalities. Each modality is processed by a specialized system (pretrained on unimodal data, and subsequently frozen). The corresponding latent representations are then encoded to and decoded from a single shared workspace. Importantly, this architecture is amenable to self-supervised training via cycle-consistency: encoding-decoding sequences should approximate the identity function. For various pairings of vision-language modalities and across two datasets of varying complexity, we show that such an architecture can be trained to align and translate between two modalities with very little need for matched data (from 4 to 7 times less than a fully supervised approach). The global workspace representation can be used advantageously for downstream classification tasks and for robust transfer learning. Ablation studies reveal that both the shared workspace and the self-supervised cycle-consistency training are critical to the system's performance.
Planktonic organisms are key components of aquatic ecosystems and respond quickly to changes in the environment, therefore their monitoring is vital to understand the changes in the environment. Yet, monitoring plankton at appropriate scales still remains a challenge, limiting our understanding of functioning of aquatic systems and their response to changes. Modern plankton imaging instruments can be utilized to sample at high frequencies, enabling novel possibilities to study plankton populations. However, manual analysis of the data is costly, time consuming and expert based, making such approach unsuitable for large-scale application and urging for automatic solutions. The key problem related to the utilization of plankton datasets through image analysis is plankton recognition. Despite the large amount of research done, automatic methods have not been widely adopted for operational use. In this paper, a comprehensive survey on existing solutions for automatic plankton recognition is presented. First, we identify the most notable challenges that that make the development of plankton recognition systems difficult. Then, we provide a detailed description of solutions for these challenges proposed in plankton recognition literature. Finally, we propose a workflow to identify the specific challenges in new datasets and the recommended approaches to address them. For many of the challenges, applicable solutions exist. However, important challenges remain unsolved: 1) the domain shift between the datasets hindering the development of a general plankton recognition system that would work across different imaging instruments, 2) the difficulty to identify and process the images of previously unseen classes, and 3) the uncertainty in expert annotations that affects the training of the machine learning models for recognition. These challenges should be addressed in the future research.
Recently, CLIP-guided image synthesis has shown appealing performance on adapting a pre-trained source-domain generator to an unseen target domain. It does not require any target-domain samples but only the textual domain labels. The training is highly efficient, e.g., a few minutes. However, existing methods still have some limitations in the quality of generated images and may suffer from the mode collapse issue. A key reason is that a fixed adaptation direction is applied for all cross-domain image pairs, which leads to identical supervision signals. To address this issue, we propose an Image-specific Prompt Learning (IPL) method, which learns specific prompt vectors for each source-domain image. This produces a more precise adaptation direction for every cross-domain image pair, endowing the target-domain generator with greatly enhanced flexibility. Qualitative and quantitative evaluations on various domains demonstrate that IPL effectively improves the quality and diversity of synthesized images and alleviates the mode collapse. Moreover, IPL is independent of the structure of the generative model, such as generative adversarial networks or diffusion models. Code is available at https://github.com/Picsart-AI-Research/IPL-Zero-Shot-Generative-Model-Adaptation.
Reviewing plays an important role when learning knowledge. The knowledge acquisition at a certain time point may be strongly inspired with the help of previous experience. Thus the knowledge growing procedure should show strong relationship along the temporal dimension. In our research, we find that during the network training, the evolution of feature map follows temporal sequence property. A proper temporal supervision may further improve the network training performance. Inspired by this observation, we design a novel knowledge distillation method. Specifically, we extract the spatiotemporal features in the different training phases of student by convolutional Long Short-term memory network (Conv-LSTM). Then, we train the student net through a dynamic target, rather than static teacher network features. This process realizes the refinement of old knowledge in student network, and utilizes them to assist current learning. Extensive experiments verify the effectiveness and advantages of our method over existing knowledge distillation methods, including various network architectures, different tasks (image classification and object detection) .
Data economy relies on data-driven systems and complex machine learning applications are fueled by them. Unfortunately, however, machine learning models are exposed to fraudulent activities and adversarial attacks, which threaten their security and trustworthiness. In the last decade or so, the research interest on adversarial machine learning has grown significantly, revealing how learning applications could be severely impacted by effective attacks. Although early results of adversarial machine learning indicate the huge potential of the approach to specific domains such as image processing, still there is a gap in both the research literature and practice regarding how to generalize adversarial techniques in other domains and applications. Fraud detection is a critical defense mechanism for data economy, as it is for other applications as well, which poses several challenges for machine learning. In this work, we describe how attacks against fraud detection systems differ from other applications of adversarial machine learning, and propose a number of interesting directions to bridge this gap.
StableDiffusion is a revolutionary text-to-image generator that is causing a stir in the world of image generation and editing. Unlike traditional methods that learn a diffusion model in pixel space, StableDiffusion learns a diffusion model in the latent space via a VQGAN, ensuring both efficiency and quality. It not only supports image generation tasks, but also enables image editing for real images, such as image inpainting and local editing. However, we have observed that the vanilla VQGAN used in StableDiffusion leads to significant information loss, causing distortion artifacts even in non-edited image regions. To this end, we propose a new asymmetric VQGAN with two simple designs. Firstly, in addition to the input from the encoder, the decoder contains a conditional branch that incorporates information from task-specific priors, such as the unmasked image region in inpainting. Secondly, the decoder is much heavier than the encoder, allowing for more detailed recovery while only slightly increasing the total inference cost. The training cost of our asymmetric VQGAN is cheap, and we only need to retrain a new asymmetric decoder while keeping the vanilla VQGAN encoder and StableDiffusion unchanged. Our asymmetric VQGAN can be widely used in StableDiffusion-based inpainting and local editing methods. Extensive experiments demonstrate that it can significantly improve the inpainting and editing performance, while maintaining the original text-to-image capability. The code is available at \url{https://github.com/buxiangzhiren/Asymmetric_VQGAN}.
The robustness of multimodal deep learning models to realistic changes in the input text is critical for their applicability to important tasks such as text-to-image retrieval and cross-modal entailment. To measure robustness, several existing approaches edit the text data, but do so without leveraging the cross-modal information present in multimodal data. Information from the visual modality, such as color, size, and shape, provide additional attributes that users can include in their inputs. Thus, we propose cross-modal attribute insertions as a realistic perturbation strategy for vision-and-language data that inserts visual attributes of the objects in the image into the corresponding text (e.g., "girl on a chair" to "little girl on a wooden chair"). Our proposed approach for cross-modal attribute insertions is modular, controllable, and task-agnostic. We find that augmenting input text using cross-modal insertions causes state-of-the-art approaches for text-to-image retrieval and cross-modal entailment to perform poorly, resulting in relative drops of 15% in MRR and 20% in $F_1$ score, respectively. Crowd-sourced annotations demonstrate that cross-modal insertions lead to higher quality augmentations for multimodal data than augmentations using text-only data, and are equivalent in quality to original examples. We release the code to encourage robustness evaluations of deep vision-and-language models: https://github.com/claws-lab/multimodal-robustness-xmai.