In this study, we present an efficient and effective approach for achieving temporally consistent synthetic-to-real video translation in videos of varying lengths. Our method leverages off-the-shelf conditional image diffusion models, allowing us to perform multiple synthetic-to-real image generations in parallel. By utilizing the available optical flow information from the synthetic videos, our approach seamlessly enforces temporal consistency among corresponding pixels across frames. This is achieved through joint noise optimization, effectively minimizing spatial and temporal discrepancies. To the best of our knowledge, our proposed method is the first to accomplish diverse and temporally consistent synthetic-to-real video translation using conditional image diffusion models. Furthermore, our approach does not require any training or fine-tuning of the diffusion models. Extensive experiments conducted on various benchmarks for synthetic-to-real video translation demonstrate the effectiveness of our approach, both quantitatively and qualitatively. Finally, we show that our method outperforms other baseline methods in terms of both temporal consistency and visual quality.
Deep neural networks have been widely applied in dichotomous medical image segmentation (DMIS) of many anatomical structures in several modalities, achieving promising performance. However, existing networks tend to struggle with task-specific, heavy and complex designs to improve accuracy. They made little instructions to which feature channels would be more beneficial for segmentation, and that may be why the performance and universality of these segmentation models are hindered. In this study, we propose an instructive feature enhancement approach, namely IFE, to adaptively select feature channels with rich texture cues and strong discriminability to enhance raw features based on local curvature or global information entropy criteria. Being plug-and-play and applicable for diverse DMIS tasks, IFE encourages the model to focus on texture-rich features which are especially important for the ambiguous and challenging boundary identification, simultaneously achieving simplicity, universality, and certain interpretability. To evaluate the proposed IFE, we constructed the first large-scale DMIS dataset Cosmos55k, which contains 55,023 images from 7 modalities and 26 anatomical structures. Extensive experiments show that IFE can improve the performance of classic segmentation networks across different anatomies and modalities with only slight modifications. Code is available at https://github.com/yezi-66/IFE
Although supervised learning has been highly successful in improving the state-of-the-art in the domain of image-based computer vision in the past, the margin of improvement has diminished significantly in recent years, indicating that a plateau is in sight. Meanwhile, the use of self-supervised learning (SSL) for the purpose of natural language processing (NLP) has seen tremendous successes during the past couple of years, with this new learning paradigm yielding powerful language models. Inspired by the excellent results obtained in the field of NLP, self-supervised methods that rely on clustering, contrastive learning, distillation, and information-maximization, which all fall under the banner of discriminative SSL, have experienced a swift uptake in the area of computer vision. Shortly afterwards, generative SSL frameworks that are mostly based on masked image modeling, complemented and surpassed the results obtained with discriminative SSL. Consequently, within a span of three years, over $100$ unique general-purpose frameworks for generative and discriminative SSL, with a focus on imaging, were proposed. In this survey, we review a plethora of research efforts conducted on image-oriented SSL, providing a historic view and paying attention to best practices as well as useful software packages. While doing so, we discuss pretext tasks for image-based SSL, as well as techniques that are commonly used in image-based SSL. Lastly, to aid researchers who aim at contributing to image-focused SSL, we outline a number of promising research directions.
We introduce a method to generate temporally coherent human animation from a single image, a video, or a random noise. This problem has been formulated as modeling of an auto-regressive generation, i.e., to regress past frames to decode future frames. However, such unidirectional generation is highly prone to motion drifting over time, generating unrealistic human animation with significant artifacts such as appearance distortion. We claim that bidirectional temporal modeling enforces temporal coherence on a generative network by largely suppressing the motion ambiguity of human appearance. To prove our claim, we design a novel human animation framework using a denoising diffusion model: a neural network learns to generate the image of a person by denoising temporal Gaussian noises whose intermediate results are cross-conditioned bidirectionally between consecutive frames. In the experiments, our method demonstrates strong performance compared to existing unidirectional approaches with realistic temporal coherence
In this work, we show that simultaneously training and mixing neural networks is a promising way to conduct Neural Architecture Search (NAS). For hyperparameter optimization, reusing the partially trained weights allows for efficient search, as was previously demonstrated by the Population Based Training (PBT) algorithm. We propose PBT-NAS, an adaptation of PBT to NAS where architectures are improved during training by replacing poorly-performing networks in a population with the result of mixing well-performing ones and inheriting the weights using the shrink-perturb technique. After PBT-NAS terminates, the created networks can be directly used without retraining. PBT-NAS is highly parallelizable and effective: on challenging tasks (image generation and reinforcement learning) PBT-NAS achieves superior performance compared to baselines (random search and mutation-based PBT).
Web image datasets curated online inherently contain ambiguous in-distribution (ID) instances and out-of-distribution (OOD) instances, which we collectively call non-conforming (NC) instances. In many recent approaches for mitigating the negative effects of NC instances, the core implicit assumption is that the NC instances can be found via entropy maximization. For "entropy" to be well-defined, we are interpreting the output prediction vector of an instance as the parameter vector of a multinomial random variable, with respect to some trained model with a softmax output layer. Hence, entropy maximization is based on the idealized assumption that NC instances have predictions that are "almost" uniformly distributed. However, in real-world web image datasets, there are numerous NC instances whose predictions are far from being uniformly distributed. To tackle the limitation of entropy maximization, we propose $(\alpha, \beta)$-generalized KL divergence, $\mathcal{D}_{\text{KL}}^{\alpha, \beta}(p\|q)$, which can be used to identify significantly more NC instances. Theoretical properties of $\mathcal{D}_{\text{KL}}^{\alpha, \beta}(p\|q)$ are proven, and we also show empirically that a simple use of $\mathcal{D}_{\text{KL}}^{\alpha, \beta}(p\|q)$ outperforms all baselines on the NC instance identification task. Building upon $(\alpha,\beta)$-generalized KL divergence, we also introduce a new iterative training framework, GenKL, that identifies and relabels NC instances. When evaluated on three web image datasets, Clothing1M, Food101/Food101N, and mini WebVision 1.0, we achieved new state-of-the-art classification accuracies: $81.34\%$, $85.73\%$ and $78.99\%$/$92.54\%$ (top-1/top-5), respectively.
We present a comprehensive evaluation of Parameter-Efficient Fine-Tuning (PEFT) techniques for diverse medical image analysis tasks. PEFT is increasingly exploited as a valuable approach for knowledge transfer from pre-trained models in natural language processing, vision, speech, and cross-modal tasks, such as vision-language and text-to-image generation. However, its application in medical image analysis remains relatively unexplored. As foundation models are increasingly exploited in the medical domain, it is crucial to investigate and comparatively assess various strategies for knowledge transfer that can bolster a range of downstream tasks. Our study, the first of its kind (to the best of our knowledge), evaluates 16 distinct PEFT methodologies proposed for convolutional and transformer-based networks, focusing on image classification and text-to-image generation tasks across six medical datasets ranging in size, modality, and complexity. Through a battery of more than 600 controlled experiments, we demonstrate performance gains of up to 22% under certain scenarios and demonstrate the efficacy of PEFT for medical text-to-image generation. Further, we reveal the instances where PEFT methods particularly dominate over conventional fine-tuning approaches by studying their relationship with downstream data volume.
Unsupervised anomaly detection in medical images such as chest radiographs is stepping into the spotlight as it mitigates the scarcity of the labor-intensive and costly expert annotation of anomaly data. However, nearly all existing methods are formulated as a one-class classification trained only on representations from the normal class and discard a potentially significant portion of the unlabeled data. This paper focuses on a more practical setting, dual distribution anomaly detection for chest X-rays, using the entire training data, including both normal and unlabeled images. Inspired by a modern self-supervised vision transformer model trained using partial image inputs to reconstruct missing image regions -- we propose AMAE, a two-stage algorithm for adaptation of the pre-trained masked autoencoder (MAE). Starting from MAE initialization, AMAE first creates synthetic anomalies from only normal training images and trains a lightweight classifier on frozen transformer features. Subsequently, we propose an adaptation strategy to leverage unlabeled images containing anomalies. The adaptation scheme is accomplished by assigning pseudo-labels to unlabeled images and using two separate MAE based modules to model the normative and anomalous distributions of pseudo-labeled images. The effectiveness of the proposed adaptation strategy is evaluated with different anomaly ratios in an unlabeled training set. AMAE leads to consistent performance gains over competing self-supervised and dual distribution anomaly detection methods, setting the new state-of-the-art on three public chest X-ray benchmarks: RSNA, NIH-CXR, and VinDr-CXR.
Hyperspectral imaging shows promise for surgical applications to non-invasively provide spatially-resolved, spectral information. For calibration purposes, a white reference image of a highly-reflective Lambertian surface should be obtained under the same imaging conditions. Standard white references are not sterilizable, and so are unsuitable for surgical environments. We demonstrate the necessity for in situ white references and address this by proposing a novel, sterile, synthetic reference construction algorithm. The use of references obtained at different distances and lighting conditions to the subject were examined. Spectral and color reconstructions were compared with standard measurements qualitatively and quantitatively, using $\Delta E$ and normalised RMSE respectively. The algorithm forms a composite image from a video of a standard sterile ruler, whose imperfect reflectivity is compensated for. The reference is modelled as the product of independent spatial and spectral components, and a scalar factor accounting for gain, exposure, and light intensity. Evaluation of synthetic references against ideal but non-sterile references is performed using the same metrics alongside pixel-by-pixel errors. Finally, intraoperative integration is assessed though cadaveric experiments. Improper white balancing leads to increases in all quantitative and qualitative errors. Synthetic references achieve median pixel-by-pixel errors lower than 6.5% and produce similar reconstructions and errors to an ideal reference. The algorithm integrated well into surgical workflow, achieving median pixel-by-pixel errors of 4.77%, while maintaining good spectral and color reconstruction.
Perception-related errors comprise most diagnostic mistakes in radiology. To mitigate this problem, radiologists employ personalized and high-dimensional visual search strategies, otherwise known as search patterns. Qualitative descriptions of these search patterns, which involve the physician verbalizing or annotating the order he/she analyzes the image, can be unreliable due to discrepancies in what is reported versus the actual visual patterns. This discrepancy can interfere with quality improvement interventions and negatively impact patient care. This study presents a novel discretized feature encoding based on spatiotemporal binning of fixation data for efficient geometric alignment and temporal ordering of eye movement when reading chest X-rays. The encoded features of the eye-fixation data are employed by machine learning classifiers to discriminate between faculty and trainee radiologists. We include a clinical trial case study utilizing the Area Under the Curve (AUC), Accuracy, F1, Sensitivity, and Specificity metrics for class separability to evaluate the discriminability between the two subjects in regard to their level of experience. We then compare the classification performance to state-of-the-art methodologies. A repeatability experiment using a separate dataset, experimental protocol, and eye tracker was also performed using eight subjects to evaluate the robustness of the proposed approach. The numerical results from both experiments demonstrate that classifiers employing the proposed feature encoding methods outperform the current state-of-the-art in differentiating between radiologists in terms of experience level. This signifies the potential impact of the proposed method for identifying radiologists' level of expertise and those who would benefit from additional training.