Multimodal foundation models have achieved impressive progress across a wide range of vision-language tasks. However, existing approaches often adopt fixed or task-specific fusion strategies, neglecting the intrinsic variability of modality reliability and sample complexity. In this paper, we propose Modality-Aware Adaptive Fusion Scheduling (MA-AFS), a general framework that learns to dynamically modulate the contribution of each modality on a per-instance basis. MA-AFS introduces a lightweight neural scheduler that predicts modality fusion weights by integrating visual and textual entropy signals along with cross-modal agreement cues. This enables the model to adaptively emphasize more reliable modalities, especially under noisy, missing, or misaligned inputs. We formulate the fusion process as a differentiable scheduling mechanism, analyze its theoretical consistency and regularization effect, and demonstrate that it improves robustness without increasing model capacity significantly. Extensive experiments on image-text retrieval, captioning, and visual question answering show that MA-AFS achieves consistent performance gains over strong baselines such as CLIP, ALBEF, and BLIP. Moreover, MA-AFS exhibits improved robustness under modality corruption and enhanced generalization under domain shifts. Our work highlights the importance of adaptive fusion and opens a promising direction toward reliable and uncertainty-aware multimodal learning.