Nonlinear dynamical systems are complex and typically only simple systems can be analytically studied. In applications, these systems are usually defined with a set of tunable parameters and as the parameters are varied the system response undergoes significant topological changes or bifurcations. In a high dimensional parameter space, it is difficult to determine which direction to vary the system parameters to achieve a desired system response or state. In this paper, we introduce a new approach for optimally navigating a dynamical system parameter space that is rooted in topological data analysis. Specifically we use the differentiability of persistence diagrams to define a topological language for intuitively promoting or deterring different topological features in the state space response of a dynamical system and use gradient descent to optimally move from one point in the parameter space to another. The end result is a path in this space that guides the system to a set of parameters that yield the desired topological features defined by the loss function. We show a number of examples by applying the methods to different dynamical systems and scenarios to demonstrate how to promote different features and how to choose the hyperparameters to achieve different outcomes.