In this study, we propose the Ductal Instance-Oriented Pipeline (DIOP) that contains a duct-level instance segmentation model, a tissue-level semantic segmentation model, and three-levels of features for diagnostic classification. Based on recent advancements in instance segmentation and the Mask R-CNN model, our duct-level segmenter tries to identify each ductal individual inside a microscopic image; then, it extracts tissue-level information from the identified ductal instances. Leveraging three levels of information obtained from these ductal instances and also the histopathology image, the proposed DIOP outperforms previous approaches (both feature-based and CNN-based) in all diagnostic tasks; for the four-way classification task, the DIOP achieves comparable performance to general pathologists in this unique dataset. The proposed DIOP only takes a few seconds to run in the inference time, which could be used interactively on most modern computers. More clinical explorations are needed to study the robustness and generalizability of this system in the future.
Video transmission applications (e.g., conferencing) are gaining momentum, especially in times of global health pandemic. Video signals are transmitted over lossy channels, resulting in low-quality received signals. To restore videos on recipient edge devices in real-time, we introduce an efficient video restoration network, EVRNet. EVRNet efficiently allocates parameters inside the network using alignment, differential, and fusion modules. With extensive experiments on video restoration tasks (deblocking, denoising, and super-resolution), we demonstrate that EVRNet delivers competitive performance to existing methods with significantly fewer parameters and MACs. For example, EVRNet has 260 times fewer parameters and 958 times fewer MACs than enhanced deformable convolution-based video restoration network (EDVR) for 4 times video super-resolution while its SSIM score is 0.018 less than EDVR. We also evaluated the performance of EVRNet under multiple distortions on unseen dataset to demonstrate its ability in modeling variable-length sequences under both camera and object motion.
Understanding the relationship between figures and text is key to scientific document understanding. Medical figures in particular are quite complex, often consisting of several subfigures (75% of figures in our dataset), with detailed text describing their content. Previous work studying figures in scientific papers focused on classifying figure content rather than understanding how images relate to the text. To address challenges in figure retrieval and figure-to-text alignment, we introduce MedICaT, a dataset of medical images in context. MedICaT consists of 217K images from 131K open access biomedical papers, and includes captions, inline references for 74% of figures, and manually annotated subfigures and subcaptions for a subset of figures. Using MedICaT, we introduce the task of subfigure to subcaption alignment in compound figures and demonstrate the utility of inline references in image-text matching. Our data and code can be accessed at https://github.com/allenai/medicat.
We introduce a very deep and light-weight transformer, DeLighT, that delivers similar or better performance than transformer-based models with significantly fewer parameters. DeLighT more efficiently allocates parameters both (1) within each Transformer block using DExTra, a deep and light-weight transformation and (2) across blocks using block-wise scaling, that allows for shallower and narrower DeLighT blocks near the input and wider and deeper DeLighT blocks near the output. Overall, DeLighT networks are 2.5 to 4 times deeper than standard transformer models and yet have fewer parameters and operations. Experiments on machine translation and language modeling tasks show that DeLighT matches the performance of baseline Transformers with significantly fewer parameters. On the WMT'14 En-Fr high resource dataset, DeLighT requires 1.8 times fewer parameters and 2 times fewer operations and achieves better performance (+0.4 BLEU score) than baseline transformers. On the WMT'16 En-Ro low resource dataset, DeLighT delivers similar performance with 2.8 times fewer parameters than baseline transformers.
Training end-to-end networks for classifying gigapixel size histopathological images is computationally intractable. Most approaches are patch-based and first learn local representations (patch-wise) before combining these local representations to produce image-level decisions. However, dividing large tissue structures into patches limits the context available to these networks, which may reduce their ability to learn representations from clinically relevant structures. In this paper, we introduce a novel attention-based network, the Holistic ATtention Network (HATNet) to classify breast biopsy images. We streamline the histopathological image classification pipeline and show how to learn representations from gigapixel size images end-to-end. HATNet extends the bag-of-words approach and uses self-attention to encode global information, allowing it to learn representations from clinically relevant tissue structures without any explicit supervision. It outperforms the previous best network Y-Net, which uses supervision in the form of tissue-level segmentation masks, by 8%. Importantly, our analysis reveals that HATNet learns representations from clinically relevant structures, and it matches the classification accuracy of human pathologists for this challenging test set. Our source code is available at \url{https://github.com/sacmehta/HATNet}
For sequence models with large word-level vocabularies, a majority of network parameters lie in the input and output layers. In this work, we describe a new method, DeFINE, for learning deep word-level representations efficiently. Our architecture uses a hierarchical structure with novel skip-connections which allows for the use of low dimensional input and output layers, reducing total parameters and training time while delivering similar or better performance versus existing methods. DeFINE can be incorporated easily in new or existing sequence models. Compared to state-of-the-art methods including adaptive input representations, this technique results in a 6% to 20% drop in perplexity. On WikiText-103, DeFINE reduces the total parameters of Transformer-XL by half with minimal impact on performance. On the Penn Treebank, DeFINE improves AWD-LSTM by 4 points with a 17% reduction in parameters, achieving comparable performance to state-of-the-art methods with fewer parameters. For machine translation, DeFINE improves the efficiency of the Transformer model by about 1.4 times while delivering similar performance.
In this paper, we propose a new CNN model DiCENet, that is built using: (1) dimension-wise convolutions and (2) efficient channel fusion. The introduced blocks maximize the use of information in the input tensor by learning representations across all dimensions while simultaneously reducing the complexity of the network and achieving high accuracy. Our model shows significant improvements over state-of-the-art models across various visual recognition tasks, including image classification, object detection, and semantic segmentation. Our model delivers either the same or better performance than existing models with fewer FLOPs, including task-specific models. Notably, DiCENet delivers competitive performance to neural architecture search-based methods at fewer FLOPs (70-100 MFLOPs). On the MS-COCO object detection, DiCENet is 4.5% more accurate and has 5.6 times fewer FLOPs than YOLOv2. On the PASCAL VOC 2012 semantic segmentation dataset, DiCENet is 4.3% more accurate and has 3.2 times fewer FLOPs than a recent efficient semantic segmentation network, ESPNet. Our source code is available at \url{https://github.com/sacmehta/EdgeNets}
In this paper, we introduce an end-to-end machine learning-based system for classifying autism spectrum disorder (ASD) using facial attributes such as expressions, action units, arousal, and valence. Our system classifies ASD using representations of different facial attributes from convolutional neural networks, which are trained on images in the wild. Our experimental results show that different facial attributes used in our system are statistically significant and improve sensitivity, specificity, and F1 score of ASD classification by a large margin. In particular, the addition of different facial attributes improves the performance of ASD classification by about 7% which achieves a F1 score of 76%.
We introduce a light-weight, power efficient, and general purpose convolutional neural network, ESPNetv2, for modeling visual and sequential data. Our network uses group point-wise and depth-wise dilated separable convolutions to learn representations from a large effective receptive field with fewer FLOPs and parameters. The performance of our network is evaluated on three different tasks: (1) object classification, (2) semantic segmentation, and (3) language modeling. Experiments on these tasks, including image classification on the ImageNet and language modeling on the PenTree bank dataset, demonstrate the superior performance of our method over the state-of-the-art methods. Our network has better generalization properties than ShuffleNetv2 when tested on the MSCOCO multi-object classification task and the Cityscapes urban scene semantic segmentation task. Our experiments show that ESPNetv2 is much more power efficient than existing state-of-the-art efficient methods including ShuffleNets and MobileNets. Our code is open-source and available at https://github.com/sacmehta/ESPNetv2
LSTMs are powerful tools for modeling contextual information, as evidenced by their success at the task of language modeling. However, modeling contexts in very high dimensional space can lead to poor generalizability. We introduce the Pyramidal Recurrent Unit (PRU), which enables learning representations in high dimensional space with more generalization power and fewer parameters. PRUs replace the linear transformation in LSTMs with more sophisticated interactions including pyramidal and grouped linear transformations. This architecture gives strong results on word-level language modeling while reducing the number of parameters significantly. In particular, PRU improves the perplexity of a recent state-of-the-art language model Merity et al. (2018) by up to 1.3 points while learning 15-20% fewer parameters. For similar number of model parameters, PRU outperforms all previous RNN models that exploit different gating mechanisms and transformations. We provide a detailed examination of the PRU and its behavior on the language modeling tasks. Our code is open-source and available at https://sacmehta.github.io/PRU/