This paper describes our winning system on SemEval 2022 Task 7: Identifying Plausible Clarifications of Implicit and Underspecified Phrases in Instructional Texts. A replaced token detection pre-trained model is utilized with minorly different task-specific heads for SubTask-A: Multi-class Classification and SubTask-B: Ranking. Incorporating a pattern-aware ensemble method, our system achieves a 68.90% accuracy score and 0.8070 spearman's rank correlation score surpassing the 2nd place with a large margin by 2.7 and 2.2 percent points for SubTask-A and SubTask-B, respectively. Our approach is simple and easy to implement, and we conducted ablation studies and qualitative and quantitative analyses for the working strategies used in our system.
Pre-trained language models have achieved state-of-the-art results in various Natural Language Processing (NLP) tasks. GPT-3 has shown that scaling up pre-trained language models can further exploit their enormous potential. A unified framework named ERNIE 3.0 was recently proposed for pre-training large-scale knowledge enhanced models and trained a model with 10 billion parameters. ERNIE 3.0 outperformed the state-of-the-art models on various NLP tasks. In order to explore the performance of scaling up ERNIE 3.0, we train a hundred-billion-parameter model called ERNIE 3.0 Titan with up to 260 billion parameters on the PaddlePaddle platform. Furthermore, we design a self-supervised adversarial loss and a controllable language modeling loss to make ERNIE 3.0 Titan generate credible and controllable texts. To reduce the computation overhead and carbon emission, we propose an online distillation framework for ERNIE 3.0 Titan, where the teacher model will teach students and train itself simultaneously. ERNIE 3.0 Titan is the largest Chinese dense pre-trained model so far. Empirical results show that the ERNIE 3.0 Titan outperforms the state-of-the-art models on 68 NLP datasets.
Pre-trained models have achieved state-of-the-art results in various Natural Language Processing (NLP) tasks. Recent works such as T5 and GPT-3 have shown that scaling up pre-trained language models can improve their generalization abilities. Particularly, the GPT-3 model with 175 billion parameters shows its strong task-agnostic zero-shot/few-shot learning capabilities. Despite their success, these large-scale models are trained on plain texts without introducing knowledge such as linguistic knowledge and world knowledge. In addition, most large-scale models are trained in an auto-regressive way. As a result, this kind of traditional fine-tuning approach demonstrates relatively weak performance when solving downstream language understanding tasks. In order to solve the above problems, we propose a unified framework named ERNIE 3.0 for pre-training large-scale knowledge enhanced models. It fuses auto-regressive network and auto-encoding network, so that the trained model can be easily tailored for both natural language understanding and generation tasks with zero-shot learning, few-shot learning or fine-tuning. We trained the model with 10 billion parameters on a 4TB corpus consisting of plain texts and a large-scale knowledge graph. Empirical results show that the model outperforms the state-of-the-art models on 54 Chinese NLP tasks, and its English version achieves the first place on the SuperGLUE benchmark (July 3, 2021), surpassing the human performance by +0.8% (90.6% vs. 89.8%).
Transformers are not suited for processing long document input due to its quadratically increasing memory and time consumption. Simply truncating a long document or applying the sparse attention mechanism will incur the context fragmentation problem or inferior modeling capability with comparable model size. In this paper, we propose ERNIE-DOC, a document-level language pretraining model based on Recurrence Transformers. Two well-designed techniques, namely the retrospective feed mechanism and the enhanced recurrence mechanism enable ERNIE-DOC with much longer effective context length to capture the contextual information of a whole document. We pretrain ERNIE-DOC to explicitly learn the relationship among segments with an additional document-aware segment reordering objective. Various experiments on both English and Chinese document-level tasks are conducted. ERNIE-DOC achieves SOTA language modeling result of 16.8 ppl on WikiText-103 and outperforms competitive pretraining models on most language understanding tasks such as text classification, question answering by a large margin.
Objective: To conduct a systematic review of deep learning methods on Electrocardiogram (ECG) data from the perspective of model architecture and their application task. Methods: First, we extensively searched papers deploying deep learning (deep neural network networks) on ECG data that published between January 1st 2010 and September 30th 2019 from Google Scholar, PubMed and DBLP. Then we analyze them in three aspects including task, model and data. Finally, we conclude unresolved challenges and problems that existing models can not handle well. Results: The total number of papers is 124, among them 97 papers are published after in recent two years. Almost all kinds of common deep learning architectures have been used in ECG analytics tasks like disease detection/classification, annotation/localization, sleep staging, biometric human identification, denoising and so on. Conclusion: The number of works about deep learning on ECG data is growing explosively in recent years. Indeed, these works have achieve a far more better performance in terms of accuracy. However, there are some new challenges and problems like interpretability, scalability, efficiency, which need to be addressed and paid more attention. Moreover, it is also worth to investigate by discovering new interesting applications from both the dataset view and the method view. Significance: This paper summarizes existing deep learning methods on modeling ECG data from multiple views, while also point out existing challenges and problems, while can become potential research direction in the future.
Gaining more comprehensive knowledge about drug-drug interactions (DDIs) is one of the most important tasks in drug development and medical practice. Recently graph neural networks have achieved great success in this task by modeling drugs as nodes and drug-drug interactions as links and casting DDI predictions as link prediction problems. However, correlations between link labels (e.g., DDI types) were rarely considered in existing works. We propose the graph energy neural network (GENN) to explicitly model link type correlations. We formulate the DDI prediction task as a structure prediction problem and introduce a new energy-based model where the energy function is defined by graph neural networks. Experiments on two real-world DDI datasets demonstrated that GENN is superior to many baselines without consideration of link type correlations and achieved $13.77\%$ and $5.01\%$ PR-AUC improvement on the two datasets, respectively. We also present a case study in which \mname can better capture meaningful DDI correlations compared with baseline models.
Medication recommendation is an important healthcare application. It is commonly formulated as a temporal prediction task. Hence, most existing works only utilize longitudinal electronic health records (EHRs) from a small number of patients with multiple visits ignoring a large number of patients with a single visit (selection bias). Moreover, important hierarchical knowledge such as diagnosis hierarchy is not leveraged in the representation learning process. To address these challenges, we propose G-BERT, a new model to combine the power of Graph Neural Networks (GNNs) and BERT (Bidirectional Encoder Representations from Transformers) for medical code representation and medication recommendation. We use GNNs to represent the internal hierarchical structures of medical codes. Then we integrate the GNN representation into a transformer-based visit encoder and pre-train it on EHR data from patients only with a single visit. The pre-trained visit encoder and representation are then fine-tuned for downstream predictive tasks on longitudinal EHRs from patients with multiple visits. G-BERT is the first to bring the language model pre-training schema into the healthcare domain and it achieved state-of-the-art performance on the medication recommendation task.
Recent progress in deep learning is revolutionizing the healthcare domain including providing solutions to medication recommendations, especially recommending medication combination for patients with complex health conditions. Existing approaches either do not customize based on patient health history, or ignore existing knowledge on drug-drug interactions (DDI) that might lead to adverse outcomes. To fill this gap, we propose the Graph Augmented Memory Networks (GAMENet), which integrates the drug-drug interactions knowledge graph by a memory module implemented as a graph convolutional networks, and models longitudinal patient records as the query. It is trained end-to-end to provide safe and personalized recommendation of medication combination. We demonstrate the effectiveness and safety of GAMENet by comparing with several state-of-the-art methods on real EHR data. GAMENet outperformed all baselines in all effectiveness measures, and also achieved 3.60% DDI rate reduction from existing EHR data.